Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12420547 chr11:123531111 C/T 1.64E-6 503 31.83 28.85 24.67 KM Plot
THCA rs12420563 chr11:123525272 C/T 1.73E-5 498 31.78 28.85 30.42 KM Plot
THCA rs12420603 chr11:123525460 G/C 1.02E-5 494 31.9 28.85 26.73 KM Plot
THCA rs12420938 chr11:123531831 C/T 1.64E-6 503 31.87 28.33 24.67 KM Plot
THCA rs12422066 chr11:123525464 T/G 1.03E-5 493 31.9 29.37 26.73 KM Plot
THCA rs12425921 chr12:132300498 G/A 0.000152 489 31.88 25.1 47.98 KM Plot
THCA rs12425934 chr12:132300528 G/A 0.000152 489 31.88 25.1 47.98 KM Plot
THCA rs12426313 chr12:132301736 G/A 0.000152 488 31.88 25.47 47.98 KM Plot
THCA rs1244457 chr10:7859134 C/T 8.15E-8 501 31.47 33.07 18.43 KM Plot
THCA rs1244469 chr10:7865885 C/T 0.000149 502 31.47 32.87 19.1 KM Plot
THCA rs1244494 chr10:7882875 T/C 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs1244496 chr10:7881062 A/T 0.000148 503 31.47 32.87 19.1 KM Plot
THCA rs1244497 chr10:7879982 A/G 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs1244499 chr10:7878369 C/G 0.000148 502 31.47 33.07 19.1 KM Plot
THCA rs1244500 chr10:7878319 C/A 0.000148 502 31.47 33.07 19.1 KM Plot